BiomarkerKB Wiki - User contributions [en]

Main Page

2024-12-20T19:42:42Z

Swathi.muralisrinivasan:

__NOTOC__
<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f9f9f9; color:#000;"><div style="margin:0.4em; text-align:center;"><div style="font-size:160%; padding:.1em;">Welcome to [https://biomarkerkb.org/ BiomarkerKB] Wiki</div>'''<u>What is BiomarkerKB?</u>'''
BiomarkerKB is a Common Fund Data Ecosystem (CFDE) sponsored project to develop a knowledgebase that will organize and integrate biomarker data from different public sources. The data will be connected to contextual information to show a novel systems-level view of biomarkers. The motivation for this project is to improve the harmonization and organization of biomarker data. This will be done by mapping biomarkers from public sources to, and across, CF data elements. This mapping will bridge knowledge across multiple Data Coordinating Centers (DCCs) and biomedical disciplines.

'''<u>Our Mission:</u>'''

Provide computational and informatics resources and tools for biomarker research.

Integrate biomarker data and knowledge from diverse resources.

'''<u>Our Goals:</u>'''

Mapping biomarkers from public sources to relevant data elements.

Mapping contextual data from participating CFDE DCCs.

Developing a framework for organizing biomarker data.

Creating tools for querying and exploring biomarker data.

Disseminating the results of this project to the research community.<div style="font-size:100%;"></div></div></div><div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB Portal|BiomarkerKB Portal]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Portal]]'' <br>
The [[BiomarkerKB portal]] is the web interface allowing browser based access to the Biomarker data...
</div>
</div>

<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB data repository|BiomarkerKB Data Repository]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Data Repository]]'' <br>
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[Frequently Asked Questions|BiomarkerKB Web Services API]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Web Services API]]'' <br>
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Frequently Asked Questions]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[Frequently Asked Questions]]'' <br>
The FAQ section contains ...
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Data Workflow & Data Model]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[Data Workflow & Data Model]]'' <br>

</div>
</div><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Data Submission/Data Upload]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[Data Submission/Data Upload]]'' <br>
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Releases]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[Releases]]'' <br>
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[Biomarker About]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[Biomarker About]]'' <br>
</div>
</div>
</div>

Main Page

2024-12-20T19:38:59Z

Swathi.muralisrinivasan:

__NOTOC__
<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f9f9f9; color:#000;"><div style="margin:0.4em; text-align:center;"><div style="font-size:160%; padding:.1em;">Welcome to [https://biomarkerkb.org/ BiomarkerKB] Wiki</div>'''<u>What is BiomarkerKB?</u>'''
BiomarkerKB is a Common Fund Data Ecosystem (CFDE) sponsored project to develop a knowledgebase that will organize and integrate biomarker data from different public sources. The data will be connected to contextual information to show a novel systems-level view of biomarkers. The motivation for this project is to improve the harmonization and organization of biomarker data. This will be done by mapping biomarkers from public sources to, and across, CF data elements. This mapping will bridge knowledge across multiple Data Coordinating Centers (DCCs) and biomedical disciplines.

'''<u>Our Mission:</u>'''

Provide computational and informatics resources and tools for biomarker research.

Integrate biomarker data and knowledge from diverse resources.

'''<u>Our Goals:</u>'''

Mapping biomarkers from public sources to relevant data elements.

Mapping contextual data from participating CFDE DCCs.

Developing a framework for organizing biomarker data.

Creating tools for querying and exploring biomarker data.

Disseminating the results of this project to the research community.<div style="font-size:100%;"></div></div></div><div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB Portal|BiomarkerKB Portal]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Portal]]'' <br>
The [[BiomarkerKB portal]] is the web interface allowing browser based access to the Biomarker data...
</div>
</div>

<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB data repository|BiomarkerKB Data Repository]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Data Repository]]'' <br>
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[Frequently Asked Questions|BiomarkerKB Web Services API]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Web Services API]]'' <br>
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Frequently Asked Questions]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[Frequently Asked Questions]]'' <br>
The FAQ section contains ...
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Data Workflow & Data Model]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[Data Workflow & Data Model]]'' <br>

</div>
</div><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Data Submission/Data Upload]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[Data Submission/Data Upload]]'' <br>
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Releases]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[Data Submission/Data Upload]]'' <br>
</div>
</div>

<div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[Biomarker About]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[Biomarker About]]'' <br>...
</div>
</div>
</div>

Biomarker About

2024-12-20T18:52:21Z

Swathi.muralisrinivasan: Created page with "About"

About

Data Submission/Data Upload

2024-12-20T18:52:10Z

Swathi.muralisrinivasan: Created page with "Data Submission/Data Upload"

Data Submission/Data Upload

Data Workflow & Data Model

2024-12-20T18:51:53Z

Swathi.muralisrinivasan: Created page with "Data Workflow & Data Model"

Data Workflow & Data Model

Main Page

2024-12-20T18:51:42Z

Swathi.muralisrinivasan:

__NOTOC__
<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f9f9f9; color:#000;"><div style="margin:0.4em; text-align:center;"><div style="font-size:160%; padding:.1em;">Welcome to [https://biomarkerkb.org/ BiomarkerKB] Wiki</div>'''<u>What is BiomarkerKB?</u>'''
BiomarkerKB is a Common Fund Data Ecosystem (CFDE) sponsored project to develop a knowledgebase that will organize and integrate biomarker data from different public sources. The data will be connected to contextual information to show a novel systems-level view of biomarkers. The motivation for this project is to improve the harmonization and organization of biomarker data. This will be done by mapping biomarkers from public sources to, and across, CF data elements. This mapping will bridge knowledge across multiple Data Coordinating Centers (DCCs) and biomedical disciplines.

'''<u>Our Mission:</u>'''

Provide computational and informatics resources and tools for biomarker research.

Integrate biomarker data and knowledge from diverse resources.

'''<u>Our Goals:</u>'''

Mapping biomarkers from public sources to relevant data elements.

Mapping contextual data from participating CFDE DCCs.

Developing a framework for organizing biomarker data.

Creating tools for querying and exploring biomarker data.

Disseminating the results of this project to the research community.<div style="font-size:100%;"></div></div></div><div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB Portal|BiomarkerKB Portal]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Portal]]'' <br>
The [[BiomarkerKB portal]] is the web interface allowing browser based access to the Biomarker data...
</div>
</div>

<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB data repository|BiomarkerKB Data Repository]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Data Repository]]'' <br>
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[Frequently Asked Questions|BiomarkerKB Web Services API]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Web Services API]]'' <br>
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Frequently Asked Questions]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[Frequently Asked Questions]]'' <br>
The FAQ section contains ...
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Data Workflow & Data Model]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[Data Workflow & Data Model]]'' <br>

</div>
</div><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Data Submission/Data Upload]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[Data Submission/Data Upload]]'' <br>
</div>
</div>
</div>
<div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[Biomarker About]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[Biomarker About]]'' <br>...
</div>
</div>
</div>

Main Page

2024-12-20T18:48:15Z

Swathi.muralisrinivasan:

__NOTOC__
<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f9f9f9; color:#000;"><div style="margin:0.4em; text-align:center;"><div style="font-size:160%; padding:.1em;">Welcome to [https://biomarkerkb.org/ BiomarkerKB] Wiki</div>'''<u>What is BiomarkerKB?</u>'''
BiomarkerKB is a Common Fund Data Ecosystem (CFDE) sponsored project to develop a knowledgebase that will organize and integrate biomarker data from different public sources. The data will be connected to contextual information to show a novel systems-level view of biomarkers. The motivation for this project is to improve the harmonization and organization of biomarker data. This will be done by mapping biomarkers from public sources to, and across, CF data elements. This mapping will bridge knowledge across multiple Data Coordinating Centers (DCCs) and biomedical disciplines.

'''<u>Our Mission:</u>'''

Provide computational and informatics resources and tools for biomarker research.

Integrate biomarker data and knowledge from diverse resources.

'''<u>Our Goals:</u>'''

Mapping biomarkers from public sources to relevant data elements.

Mapping contextual data from participating CFDE DCCs.

Developing a framework for organizing biomarker data.

Creating tools for querying and exploring biomarker data.

Disseminating the results of this project to the research community.<div style="font-size:100%;"></div></div></div><div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB Portal|BiomarkerKB Portal]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Portal]]'' <br>
The [[BiomarkerKB portal]] is the web interface allowing browser based access to the Biomarker data...
</div>
</div>

<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB data repository|BiomarkerKB Data Repository]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Data Repository]]'' <br>
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[Frequently Asked Questions|BiomarkerKB Web Services API]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Web Services API]]'' <br>
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Frequently Asked Questions]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[Frequently Asked Questions]]'' <br>
The FAQ section contains ...
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>Data Workflow | Data Model</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}

</div>
</div><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Frequently Asked Questions|Data Submission/Data Upload]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}
...
</div>
</div>
</div>
<div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[BiomarkerKB Web Services API|Biomarker About]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|BiomarkerKB Web Services API}}
...
</div>
</div>
</div>

Frequently Asked Questions

2024-12-20T18:47:24Z

Swathi.muralisrinivasan:

FAQ

BiomarkerKB Web Services API

2024-12-20T18:46:50Z

Swathi.muralisrinivasan: Created page with "About Web Services API"

About Web Services API

Frequently Asked Questions

2024-12-20T18:46:39Z

Swathi.muralisrinivasan: Created page with "About Web Services API"

About Web Services API

Main Page

2024-12-20T18:46:30Z

Swathi.muralisrinivasan:

__NOTOC__
<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f9f9f9; color:#000;"><div style="margin:0.4em; text-align:center;"><div style="font-size:160%; padding:.1em;">Welcome to [https://biomarkerkb.org/ BiomarkerKB] Wiki</div>'''<u>What is BiomarkerKB?</u>'''
BiomarkerKB is a Common Fund Data Ecosystem (CFDE) sponsored project to develop a knowledgebase that will organize and integrate biomarker data from different public sources. The data will be connected to contextual information to show a novel systems-level view of biomarkers. The motivation for this project is to improve the harmonization and organization of biomarker data. This will be done by mapping biomarkers from public sources to, and across, CF data elements. This mapping will bridge knowledge across multiple Data Coordinating Centers (DCCs) and biomedical disciplines.

'''<u>Our Mission:</u>'''

Provide computational and informatics resources and tools for biomarker research.

Integrate biomarker data and knowledge from diverse resources.

'''<u>Our Goals:</u>'''

Mapping biomarkers from public sources to relevant data elements.

Mapping contextual data from participating CFDE DCCs.

Developing a framework for organizing biomarker data.

Creating tools for querying and exploring biomarker data.

Disseminating the results of this project to the research community.<div style="font-size:100%;"></div></div></div><div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB Portal|BiomarkerKB Portal]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Portal]]'' <br>
The [[BiomarkerKB portal]] is the web interface allowing browser based access to the Biomarker data...
</div>
</div>

<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB data repository|BiomarkerKB Data Repository]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Data Repository]]'' <br>
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[Frequently Asked Questions|BiomarkerKB Web Services API]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Web Services API]]'' <br>
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Frequently Asked Questions]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}
The FAQ section contains ...
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>Data Workflow | Data Model</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}

</div>
</div><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Frequently Asked Questions|Data Submission/Data Upload]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}
...
</div>
</div>
</div>
<div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[BiomarkerKB Web Services API|Biomarker About]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|BiomarkerKB Web Services API}}
...
</div>
</div>
</div>

Main Page

2024-12-20T18:45:53Z

Swathi.muralisrinivasan:

__NOTOC__
<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f9f9f9; color:#000;"><div style="margin:0.4em; text-align:center;"><div style="font-size:160%; padding:.1em;">Welcome to [https://biomarkerkb.org/ BiomarkerKB] Wiki</div>'''<u>What is BiomarkerKB?</u>'''
BiomarkerKB is a Common Fund Data Ecosystem (CFDE) sponsored project to develop a knowledgebase that will organize and integrate biomarker data from different public sources. The data will be connected to contextual information to show a novel systems-level view of biomarkers. The motivation for this project is to improve the harmonization and organization of biomarker data. This will be done by mapping biomarkers from public sources to, and across, CF data elements. This mapping will bridge knowledge across multiple Data Coordinating Centers (DCCs) and biomedical disciplines.

'''<u>Our Mission:</u>'''

Provide computational and informatics resources and tools for biomarker research.

Integrate biomarker data and knowledge from diverse resources.

'''<u>Our Goals:</u>'''

Mapping biomarkers from public sources to relevant data elements.

Mapping contextual data from participating CFDE DCCs.

Developing a framework for organizing biomarker data.

Creating tools for querying and exploring biomarker data.

Disseminating the results of this project to the research community.<div style="font-size:100%;"></div></div></div><div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB Portal|BiomarkerKB Portal]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Portal]]'' <br>
The [[BiomarkerKB portal]] is the web interface allowing browser based access to the Biomarker data...
</div>
</div>

<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB data repository|BiomarkerKB Data Repository]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Data Repository]]'' <br>
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[Frequently Asked Questions|BiomarkerKB Web Services API]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Data Repository]]'' <br>
The FAQ section contains ...
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Frequently Asked Questions]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}
The FAQ section contains ...
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>Data Workflow | Data Model</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}

</div>
</div><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Frequently Asked Questions|Data Submission/Data Upload]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}
...
</div>
</div>
</div>
<div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[BiomarkerKB Web Services API|Biomarker About]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|BiomarkerKB Web Services API}}
...
</div>
</div>
</div>

BiomarkerKB Data Repository

2024-12-20T18:44:26Z

Swathi.muralisrinivasan: Created page with "About BiomarkerKB Data Repository"

About BiomarkerKB Data Repository

Main Page

2024-12-20T18:44:08Z

Swathi.muralisrinivasan:

__NOTOC__
<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f9f9f9; color:#000;"><div style="margin:0.4em; text-align:center;"><div style="font-size:160%; padding:.1em;">Welcome to [https://biomarkerkb.org/ BiomarkerKB] Wiki</div>'''<u>What is BiomarkerKB?</u>'''
BiomarkerKB is a Common Fund Data Ecosystem (CFDE) sponsored project to develop a knowledgebase that will organize and integrate biomarker data from different public sources. The data will be connected to contextual information to show a novel systems-level view of biomarkers. The motivation for this project is to improve the harmonization and organization of biomarker data. This will be done by mapping biomarkers from public sources to, and across, CF data elements. This mapping will bridge knowledge across multiple Data Coordinating Centers (DCCs) and biomedical disciplines.

'''<u>Our Mission:</u>'''

Provide computational and informatics resources and tools for biomarker research.

Integrate biomarker data and knowledge from diverse resources.

'''<u>Our Goals:</u>'''

Mapping biomarkers from public sources to relevant data elements.

Mapping contextual data from participating CFDE DCCs.

Developing a framework for organizing biomarker data.

Creating tools for querying and exploring biomarker data.

Disseminating the results of this project to the research community.<div style="font-size:100%;"></div></div></div><div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB Portal|BiomarkerKB Portal]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Portal]]'' <br>
The [[BiomarkerKB portal]] is the web interface allowing browser based access to the Biomarker data...
</div>
</div>

<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB data repository|BiomarkerKB Data Repository]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Data Repository]]'' <br>
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[Frequently Asked Questions|BiomarkerKB Web Services API]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}
The FAQ section contains ...
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Frequently Asked Questions]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}
The FAQ section contains ...
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>Data Workflow | Data Model</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}

</div>
</div><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Frequently Asked Questions|Data Submission/Data Upload]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}
...
</div>
</div>
</div>
<div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[BiomarkerKB Web Services API|Biomarker About]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|BiomarkerKB Web Services API}}
...
</div>
</div>
</div>

BiomarkerKB Portal

2024-12-20T18:41:14Z

Swathi.muralisrinivasan: Created page with "About BiomarkerKB Portal"

About BiomarkerKB Portal

Main Page

2024-12-20T18:40:37Z

Swathi.muralisrinivasan:

__NOTOC__
<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f9f9f9; color:#000;"><div style="margin:0.4em; text-align:center;"><div style="font-size:160%; padding:.1em;">Welcome to [https://biomarkerkb.org/ BiomarkerKB] Wiki</div>'''<u>What is BiomarkerKB?</u>'''
BiomarkerKB is a Common Fund Data Ecosystem (CFDE) sponsored project to develop a knowledgebase that will organize and integrate biomarker data from different public sources. The data will be connected to contextual information to show a novel systems-level view of biomarkers. The motivation for this project is to improve the harmonization and organization of biomarker data. This will be done by mapping biomarkers from public sources to, and across, CF data elements. This mapping will bridge knowledge across multiple Data Coordinating Centers (DCCs) and biomedical disciplines.

'''<u>Our Mission:</u>'''

Provide computational and informatics resources and tools for biomarker research.

Integrate biomarker data and knowledge from diverse resources.

'''<u>Our Goals:</u>'''

Mapping biomarkers from public sources to relevant data elements.

Mapping contextual data from participating CFDE DCCs.

Developing a framework for organizing biomarker data.

Creating tools for querying and exploring biomarker data.

Disseminating the results of this project to the research community.<div style="font-size:100%;"></div></div></div><div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB Portal|BiomarkerKB Portal]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
    '''''Main article:''' [[BiomarkerKB Portal]]'' <br>
The [[BiomarkerKB portal]] is the web interface allowing browser based access to the Biomarker data...
</div>
</div>

<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB data repository|BiomarkerKB Data Repository]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|BiomarkerKB data repository}}...
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[Frequently Asked Questions|BiomarkerKB Web Services API]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}
The FAQ section contains ...
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Frequently Asked Questions]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}
The FAQ section contains ...
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>Data Workflow | Data Model</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}

</div>
</div><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Frequently Asked Questions|Data Submission/Data Upload]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}
...
</div>
</div>
</div>
<div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
=== [[BiomarkerKB Web Services API|Biomarker About]] ===
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|BiomarkerKB Web Services API}}
...
</div>
</div>
</div>

BiomarkerKB data repository

2024-12-20T18:36:08Z

Swathi.muralisrinivasan: Created page with "About data repo"

About data repo

BiomarkerKB portal

2024-12-20T18:29:48Z

Swathi.muralisrinivasan: Created BiomarkerKB Portal page

[About BiomarkerKB portal]

Main Page

2024-12-19T21:28:48Z

Swathi.muralisrinivasan: Removed TOC

Main Page

2024-12-19T21:12:47Z

Swathi.muralisrinivasan:

<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f9f9f9; color:#000;"><div style="margin:0.4em; text-align:center;"><div style="font-size:160%; padding:.1em;">Welcome to [https://biomarkerkb.org/ BiomarkerKB] Wiki</div><div style="font-size:100%;">[Add additional text about BiomarkerKB</div></div></div><div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB portal|BiomarkerKB Portal]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|BiomarkerKB portal}}
The [[BiomarkerKB portal]] is the web interface allowing browser based access to the Biomarker data...
</div>
</div>

<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB data repository|BiomarkerKB Data Repository]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|BiomarkerKB data repository}}...
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Frequently Asked Questions]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}
The FAQ section contains ...
</div>
</div>
<div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB Web Services API|BiomarkerKB Web Services API]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|BiomarkerKB Web Services API}}
...
</div>
</div>
</div>

Main Page

2024-12-19T21:11:21Z

Swathi.muralisrinivasan: Basic structure of the Main wiki page

<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f9f9f9; color:#000;"><div style="margin:0.4em; text-align:center;"><div style="font-size:160%; padding:.1em;">Welcome to [https://biomarkerkb.org/ BiomarkerKB] Wiki</div><div style="font-size:100%;">[Add additional text about BiomarkerKB]</div></div></div>
<div style="clear: both;"></div>
<div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB portal|BiomarkerKB Portal]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|BiomarkerKB portal}}
The [[BiomarkerKB portal]] is the web interface allowing browser based access to the Biomarker data...
</div>
</div>

<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB data repository|BiomarkerKB Data Repository]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|BiomarkerKB data repository}}...
</div>
</div>
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[Frequently Asked Questions]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|Frequently Asked Questions}}
The FAQ section contains ...
</div>
</div>
<div id="ggw_row2" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"><div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
<h3>[[BiomarkerKB Web Services API|BiomarkerKB Web Services API]]</h3>
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
{{main|BiomarkerKB Web Services API}}
...
</div>
</div>
</div>