https://wiki.biomarkerkb.org/index.php?action=history&feed=atom&title=Biomarker_Modifications_Terms_Controlled_Vocabulary 2026-05-08T14:16:06Z Revision history for this page on the wiki MediaWiki 1.42.3 https://wiki.biomarkerkb.org/index.php?title=Biomarker_Modifications_Terms_Controlled_Vocabulary&diff=142&oldid=prev 2025-12-10T15:53:05Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:53, 10 December 2025</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[Biomarker Entity Types Controlled Vocabulary]]</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[Biomarker Reporting Terms Controlled Vocabulary]]</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[Biomarker Aspect Terms Controlled Vocabulary]]</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;nowiki&gt;---------------------------------------------------------------------------&lt;/nowiki&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;nowiki&gt;---------------------------------------------------------------------------&lt;/nowiki&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> </table>

DaniallMasood https://wiki.biomarkerkb.org/index.php?title=Biomarker_Modifications_Terms_Controlled_Vocabulary&diff=122&oldid=prev 2025-11-06T19:28:37Z

<p>new modifications controlled vocab page</p> <p><b>New page</b></p><div>&lt;nowiki&gt;---------------------------------------------------------------------------&lt;/nowiki&gt;<br /> <br />        BiomarkerKB Controlled Vocabulary:<br /> <br />          Biomarker Modifications Controlled Vocabulary File<br /> <br />          Biomarker Knowledgebase Project<br /> <br /> &lt;nowiki&gt;---------------------------------------------------------------------------&lt;/nowiki&gt;<br /> <br /> Description: Controlled vocabulary of molecular modifications representing<br /> <br /> chemical or post-translational changes to biomarker entities.<br /> <br /> Name:        modifications.txt<br /> <br /> Release:     2025_07_16<br /> <br /> &lt;nowiki&gt;---------------------------------------------------------------------------&lt;/nowiki&gt;<br /> <br />  This document lists controlled modification terms that describe chemical,<br /> <br />  structural, or enzymatic alterations to biomarker entities. These terms<br /> <br />  are used to represent states such as methylation, phosphorylation, or<br /> <br />  glycosylation, enabling consistent annotation of modified biomarker forms.<br /> <br />  Each entry consists of the following line codes:<br /> <br />    ----  ----------  ---------------------------  ---------------------------------<br /> <br />  Code  Name        Content                      Occurrences<br /> <br />  ----  ----------  ---------------------------  ---------------------------------<br /> <br />  ID    Identifier  Modification term            Once; starts an entry<br /> <br />  AC   Accession   Unique identifier (MO-xxxx)  Once<br /> <br />  DE   Definition  Definition/description     Once; line wrapping possible<br /> <br />  HI    Hierarchy                                Optional; zero or more<br /> <br />  EQ   Equivalent  External identifier with     Optional; zero or more<br /> <br />                       same meaning<br /> <br />  EX    Example                                  Optional; zero or once<br /> <br />  NT    Notes                                    Optional; zero or once; line<br /> <br />                                                   wrapping possible<br /> <br />  //    Terminator  End of entry                 Once; ends an entry<br /> <br /> &lt;nowiki&gt;---------------------------------------------------------------------------&lt;/nowiki&gt;<br /> <br /> ID   methylation<br /> <br /> AC   MO-0001<br /> <br /> DE   The process in which a methyl group is covalently attached to a molecule.<br /> <br /> HI   chemical modification<br /> <br /> EQ   GO:0032259; methylation<br /> <br /> EX   presence of methylation in DCC; &lt;nowiki&gt;https://biomarkerkb.org/canonical/AN6479&lt;/nowiki&gt;<br /> <br /> //<br /> <br /> ID   phosphorylation<br /> <br /> AC   MO-0002<br /> <br /> DE   The process of introducing a phosphate group into a molecule, usually <br /> <br /> DE   with the formation of a phosphoric ester, a phosphoric anhydride or a <br /> <br /> DE   phosphoric amide.<br /> <br /> HI   post-translational modification<br /> <br /> EQ   GO:0016310; phosphorylation<br /> <br /> EX   AKT1 S473 Phosphorylation; &lt;nowiki&gt;https://biomarkerkb.org/canonical/AN4659&lt;/nowiki&gt;<br /> <br /> //<br /> <br /> ID   acetylation<br /> <br /> AC   MO-0003<br /> <br /> DE   Acetylation involves the covalent linkage of an acetyl group into an <br /> <br /> DE   organic molecule.<br /> <br /> HI   post-translational modification<br /> <br /> EQ   NCIT:C16255; Acetylation<br /> <br /> //<br /> <br /> ID   glycosylation<br /> <br /> AC   MO-0004<br /> <br /> DE   The covalent chemical or biochemical addition of carbohydrate or glycosyl <br /> <br /> DE   groups to other chemicals, by glycosyl transferases.<br /> <br /> HI   post-translational modification<br /> <br /> EQ   NCIT:C21034; Glycosylation<br /> <br /> //</div>

DaniallMasood