DaniallMasood at 15:51, 10 December 2025

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			[[Biomarker Entity Types Controlled Vocabulary]]

			[[Biomarker Aspect Terms Controlled Vocabulary]]

			[[Biomarker Modifications Terms Controlled Vocabulary]]

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BiomarkerKB Controlled Vocabulary:

Biomarker Reporting Terms Controlled Vocabulary File

Biomarker Knowledgebase Project

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Description: Controlled vocabulary of standardized terms used to describe

biomarker status, behavior, or detection in curated data entries.

Name: measured.txt

Release: 2025_07_16

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This document lists the controlled reporting terms used to describe

biomarkers in the BiomarkerKB curation system. These nouns are used

in fields like `biomarker` to standardize natural language descriptions.

These terms are classified into categories such as:

''' * increased'''

Each entry consists of the following line codes:

---- ---------- --------------------------- ---------------------------------

Code Name Content Occurrences

---- ---------- --------------------------- ---------------------------------

ID Identifier Reporting term Once; starts an entry

AC Accession Unique identifier (RT-xxxx) Once

DE Definition Definition/description Once; line wrapping possible

HI Hierarchy Optional; zero or more

SY Synonym Optional; zero or more

EQ Equivalent External identifier with Optional; zero or more

same meaning

EX Example Optional; zero or once

NT Notes Optional; zero or once; line

wrapping possible

// Terminator End of entry Once; ends an entry

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ID increased

AC RT-0001

DE Indicates an assessed biomarker entity level is higher than normal by

DE a clinically relevant degree.

HI abundance

EQ PATO:0002300; increased quality

EX increased IL6 level; <nowiki>https://biomarkerkb.org/canonical/AN6278</nowiki>

//

ID decreased

AC RT-0002

DE Indicates an assessed biomarker entity level is lower than normal by

DE a clinically relevant degree.

HI abundance

EQ PATO:0002301; decreased quality

EX decreased albumin level; <nowiki>https://biomarkerkb.org/canonical/AN6351</nowiki>

//

ID presence of

AC RT-0006

DE Indicates that the assessed entity is present.

HI presence

EX presence of rs180177132 mutation in PALB2;

EX <nowiki>https://biomarkerkb.org/canonical/AV9568</nowiki>

//

ID difference

AC RT-0007

DE A statistic that is a subtraction of one quantity from another.

HI expression

EQ STATO:0000613; difference

EX differential expression of TNMD; <nowiki>https://biomarkerkb.org/canonical/BB1486</nowiki>

//

Biomarker Reporting Terms Controlled Vocabulary - Revision history

DaniallMasood at 15:51, 10 December 2025