Xrefs and annotations
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Cross-references to other resources from BiomarkerKB. BiomarkerKB from it cross-reference section provides cross-reference links to other protein, gene, glycan, metabolite databases and resources for further exploration.
BiomarkerKB Xrefs (Currently Added)
- UniProtKB
- GTEx
- Pharos
- Reactome
- Undiagnosed Diseases Network
- Illuminating the Druggable Genome (IDG) Reactome Portal
- Metabolomics Workbench
- SigCom LINCS
- Metabolomics Workbench
- ENCODE (Encyclopedia of DNA Elements)
- ClinGen (Clinical Genome Resource)
- MARRVEL (Model organism Aggregated Resources for Rare Variant ExpLoration)
- GeneVA (Gene Variation Analysis)
- GeneCards
- BioGPS
- HGNC (HUGO Gene Nomenclature Committee)
- GWAS Catalog
- PDBe-KB
- PCRP
- IDG Reactome
- Bgee
- NCBI Gene
- KEGG
- SigCom LINCS
- Gene Ontology
- Reactome
- GeneMANIA
- Human Protein Atlas
- AlphaFold
- Open Targets
- UCSC Genome Browser
- Undiagnosed Diseases Network
- BioMuta
- GlyGen Protein
- UniProtKB
- Protein Ontology
- PubChem
- dbSNP
- LOINC
- Cell Ontology
- ChEBI
- NCI Thesaurus
- GlyGen Glycan
- Protein Data Bank
- RNAcentral
- Monarch Initiative
- GlyTouCan
- miRBase
Xrefs to be added
- Bgee
- Kegg
- MIM
- HMDB ID
- Ensembl
- RefSeq
- MONDO
- DisGeNET
- Orphanet
Annotations
BiomarkerKB contains additional information called which is termed as 'Annotations' that complements the biomarker information in different sections of the BiomarkerKB details page
Annotations in BiomarkerKB (Current)
- Normal range data for BiomarkerKB entity from the Electronic Health Data from GWDC and Oracle Health.
Annotations to be added
- General (Name, description, class for Gene, Protein, Glycan and Metabolite)
- Function information about Gene, Protein and Metabolite
- Phenotype Data for Genes and Proteins that complement condition information
- Information about variant from dbSNP
- 3D structures for Gene, Protein, Glycan and Metabolite
For current and upcoming data and data resources list in BiomarkerKB please visit - BiomarkerKB Resource Integration