Xrefs and annotations

Cross-references to other resources from BiomarkerKB. BiomarkerKB from it cross-reference section provides cross-reference links to other protein, gene, glycan, metabolite databases and resources for further exploration.

BiomarkerKB Xrefs (Currently Added)

• UniProtKB
• GTEx
• Pharos
• Reactome
• Undiagnosed Diseases Network
• Illuminating the Druggable Genome (IDG) Reactome Portal
• Metabolomics Workbench
• SigCom LINCS
• Metabolomics Workbench
• ENCODE (Encyclopedia of DNA Elements)
• ClinGen (Clinical Genome Resource)
• MARRVEL (Model organism Aggregated Resources for Rare Variant ExpLoration)
• GeneVA (Gene Variation Analysis)
• GeneCards
• BioGPS
• HGNC (HUGO Gene Nomenclature Committee)
• GWAS Catalog
• PDBe-KB
• PCRP
• IDG Reactome
• Bgee
• NCBI Gene
• KEGG
• SigCom LINCS
• Gene Ontology
• Reactome
• GeneMANIA
• Human Protein Atlas
• AlphaFold
• Open Targets
• UCSC Genome Browser
• Undiagnosed Diseases Network
• BioMuta
• GlyGen Protein
• UniProtKB
• Protein Ontology
• PubChem
• dbSNP
• LOINC
• Cell Ontology
• ChEBI
• NCI Thesaurus
• GlyGen Glycan
• Protein Data Bank
• RNAcentral
• Monarch Initiative
• GlyTouCan
• miRBase

Xrefs to be added

• Bgee
• Kegg
• MIM
• HMDB ID
• Ensembl
• RefSeq
• MONDO
• DisGeNET
• Orphanet

Annotations

BiomarkerKB contains additional information called which is termed as 'Annotations' that complements the biomarker information in different sections of the BiomarkerKB details page

Annotations in BiomarkerKB (Current)

• Normal range data for BiomarkerKB entity from the Electronic Health Data from GWDC and Oracle Health.

Annotations to be added

• General (Name, description, class for Gene, Protein, Glycan and Metabolite)
• Function information about Gene, Protein and Metabolite
• Phenotype Data for Genes and Proteins that complement condition information
• Information about variant from dbSNP
• 3D structures for Gene, Protein, Glycan and Metabolite